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Scientists Map Human Brain in Detail

A major international research collaboration announced on June 10, 2021, the release of the most detailed map of the human brain ever produced, offering neuroscientists a powerful new resource for understanding how the brain is organised, how it develops, and how disease alters its structure and function.

The Daily Chronicle News Desk
June 10, 2021
10 min read
Scientists Map Human Brain in Detail

A major international research collaboration announced on June 10, 2021, the release of the most detailed map of the human brain ever produced — a work that combines high-resolution imaging, single-cell molecular data, and large-scale computational analysis to provide neuroscientists with an unprecedented reference for understanding how the brain is organised, how it develops across the lifespan, and how disease alters its structure and function. The project, the culmination of years of coordinated work by laboratories across several continents, is being described as a landmark contribution to brain science and as a foundation on which the next generation of neurological research is expected to be built.

The map brings together anatomical detail at a level of precision not previously available at the scale of the entire brain, combined with molecular profiles of individual cells, information about how those cells connect to one another, and data on how these features vary between individuals. Its release is accompanied by a series of publications in leading journals, by the public release of large datasets through open data portals, and by the launch of browsing and analytical tools designed to allow researchers anywhere in the world to explore the map in detail.

Researchers examine a high-resolution image of brain tissue on a large display as part of the ongoing mapping effort
Researchers examine a high-resolution image of brain tissue on a large display as part of the ongoing mapping effort

What the Map Contains

The human brain contains something on the order of 86 billion neurons, an even larger number of supporting cells, and an almost inconceivable number of connections between them. Mapping it in detail is one of the most ambitious challenges in modern science, and the project behind today's announcement has approached it through a careful integration of multiple complementary techniques.

At the level of large-scale structure, the map draws on high-resolution magnetic resonance imaging to delineate the major regions of the brain, the boundaries between them, and the fibre tracts that connect them. At the level of tissue architecture, it incorporates data from thin sections prepared using specialised staining techniques and imaged with high-resolution microscopy, providing detail at a scale of micrometres across the entire cortex. At the level of individual cells, it includes single-cell transcriptomic profiles — measurements of which genes are being actively expressed in thousands of individual cells — that allow different cell types to be identified, classified, and located within the broader anatomical framework.

The map also provides information about variation between individuals. Data has been collected from a large and demographically diverse set of donors, allowing researchers to begin to understand which features of brain organisation are highly conserved across people and which vary meaningfully between them. This variation information is itself a significant scientific resource, because it underpins the kind of population-scale analyses that are increasingly central to understanding both normal brain function and the biological basis of neurological and psychiatric conditions.

A Product of Large-Scale Collaboration

The project has been characterised throughout its development by large-scale international collaboration, with research groups in multiple countries contributing data, expertise, and infrastructure. Advances in imaging technology, in molecular biology, in computational analysis, and in data sharing have all been drawn upon, and the map itself is the product of the systematic integration of these contributions.

Collaboration on this scale is a relatively recent phenomenon in brain science, and it has only become feasible in the past decade as the underlying technologies have matured and as funding agencies in several countries have made strategic commitments to brain-scale research initiatives. Several national and supranational brain projects — in the United States, in Europe, in Japan, in China, and elsewhere — have together provided a significant share of the funding and institutional support that has made the work possible. Today's announcement reflects that the time and investment required to deliver a map of this comprehensiveness have yielded a concrete and usable scientific product.

One of the defining features of the collaboration has been its commitment to open science. The datasets underpinning the map, the tools used to analyse them, and the publications describing the work are being released through open channels, with the explicit goal of allowing researchers anywhere in the world to access, use, and extend the resource. Training materials, workshops, and community support efforts have also been organised to help researchers at a wide range of career stages and institutional contexts to take advantage of the new map.

What the Map Reveals

Among the specific findings emerging from the project, several have attracted particular attention. Researchers have identified many more distinct cell types in the human brain than had previously been catalogued, with particular richness in specific regions of the cortex that are associated with higher cognitive functions. Some of these cell types appear to be shared with other mammals; others appear to be unusually prominent or even unique to the human lineage, raising questions about their possible roles in distinctively human capacities.

The map has also produced new insights into the fine-scale organisation of brain connectivity. Patterns of connection between different cell types, and between different regions, have been characterised at levels of detail that were not previously accessible. These patterns form the basis on which the brain's information-processing capabilities depend, and their systematic characterisation is considered an essential step toward more mechanistic accounts of brain function.

Developmental information has been integrated wherever possible, and the map includes data on how specific cell populations and connections emerge, change, and mature across different stages of life. This developmental dimension is essential for understanding a number of conditions — including autism spectrum disorders, schizophrenia, and certain forms of epilepsy — in which specific developmental processes are thought to play a critical role.

The map also provides a new framework for studying disease. Post-mortem tissue samples from individuals affected by a range of neurological and psychiatric conditions have been analysed in the same way as samples from the broader reference population, allowing disease-associated changes to be located within the map's overall framework. Early analyses presented alongside the map's release have identified specific cell populations that appear disproportionately affected in particular conditions, opening new lines of investigation for researchers working on those conditions.

Why It Matters

The impact of a comprehensive brain map is broad. At the most immediate level, it accelerates research by providing a common reference that researchers in different laboratories can use to describe, compare, and interpret their findings. Past differences in naming conventions, regional definitions, and classification schemes have often made it difficult to aggregate findings across studies; a shared high-resolution map reduces these frictions and allows cumulative scientific progress to proceed more efficiently.

In translational research — the work of connecting basic science to clinical application — the map offers concrete benefits. Understanding which specific cell populations are affected by a given condition is often the first step toward the development of precisely targeted therapies. The identification of distinctive molecular profiles associated with specific cell types, and the ability to locate those cell types anatomically, supports drug development in ways that a coarser understanding of the brain could not.

In basic neuroscience, the map provides new opportunities for mechanistic research. Studies of how specific circuits give rise to specific behaviours, of how neural activity is coordinated across regions during cognition, and of how the brain adapts to experience and learning can all proceed on a firmer anatomical and molecular foundation.

Beyond its direct scientific uses, the map is also likely to influence the public understanding of the brain and of neuroscience more broadly. Visualisations generated from the map are already being incorporated into educational materials, into museum exhibits, and into public communication about the brain. The ability to show, concretely, what is known about the organisation of the brain — and, by contrast, what remains uncertain — supports a more grounded public conversation about the state and promise of brain science.

Open Questions and Caveats

Alongside the optimism surrounding the release, researchers have been careful to highlight the limits of what the map does and does not represent. A detailed static map of cellular and anatomical organisation does not, on its own, explain how the brain works. The dynamic processes by which neurons communicate, by which circuits give rise to behaviour, and by which the brain adapts across time all require additional forms of investigation that the map supports but does not itself provide.

Ethical considerations have also been prominent in discussions of the project. The use of donated post-mortem tissue, the handling of genetic information from donors, and the responsibilities associated with building datasets that touch on some of the most intimate aspects of human biology have all required careful governance. The project's organisers have emphasised the importance of sustained attention to these questions as the map continues to be used and expanded.

Questions of equity, too, have featured in the project's discussions. The donors represented in the current release are demographically diverse but inevitably imperfectly representative of global populations. Future expansions are expected to address these limitations, and researchers have explicitly committed to working toward a brain-mapping resource that reflects the full range of human variation.

Looking Ahead

The release of the map today is not the end of the mapping effort; it is a significant milestone within an ongoing programme. Future work is expected to expand the map to include more donors, additional brain regions, and richer kinds of data. Technological advances — including improvements in imaging, in molecular profiling, and in computational analysis — are expected to allow further refinements over the coming years. And the integration of the static map with functional data, capturing how the brain actually operates in time, is likely to be a major focus of the next phase of the project.

For researchers, clinicians, and students working on the brain, the map released today offers a new foundation on which to build. For patients and families affected by neurological and psychiatric conditions, it offers a renewed basis for hope that the painstaking work of science can, over time, produce advances in understanding and in treatment. And for the public more broadly, it offers a reminder of what sustained, well-funded, internationally coordinated scientific effort can achieve.

A Quiet Kind of Progress

Discoveries in brain science rarely arrive as sudden revelations. The more common pattern is one of quiet, accumulating progress — new tools developed, new questions formulated, new datasets released, new analyses completed, new publications written, new collaborations formed. Over time, these small increments add up to substantial shifts in what is known and what can be done.

Today's announcement is a particularly striking example of that pattern. It is not the end of anything. It is a careful, professional, and deeply impressive step on a road that will continue to be walked for decades. What has been released is a resource. What happens with it now — the research it enables, the collaborations it supports, the questions it helps to answer — will be the longer story. On the available evidence, it is a story well worth following.

Published on June 10, 2021 in Science